Bug fixes: The Linux font problem (in the navigate windows) is now fixed, as are many other Consed bugs. As more and more sites have used Autofinish in more different ways, I've fixed Autofinish bugs that were not apparent in testing. Thus this version of Autofinish is far more robust. Each of these new features is explained in README.txt supplied with Consed. New Autofinish Features: * PCR can be used to close gaps * detects runs and stops and suggests special chemistry for reads crossing such areas * ability to set a *minimum* number of templates for a primer. For example, you might specify that if a primer has only one acceptable template, you don't want the primer chosen. * ability to not pick primers in single subclone regions, unaligned high quality regions, or regions with high quality discrepancies * you can specify a maximum size for finishing reads (useful if your finishing reads are shorter than your shotgun reads) New Consed Features: * you can have backgrounds other than black--good for making color copies * chromatograms can be kept in some location other than ../chromat_dir For example, they can be kept in an external database. * ability to prevent 2 Consed users from making edits to the same project at the same time * can define keys to add tags and to run external programs. This is helpful for connecting Consed to external databases for recording judgments made by a user. * if read names are too long to fit in the Aligned Reads Window, you can change them in the General Preferences Window without needing to restart Consed * traces can be automatically scaled so a project can contain ABI and MegaBACE traces and the user doesn't need to change the scaling each time he/she views a trace * can type in part of a read name and find it. E.g., read djs422_8064.s1 can be found by just typing 8064