Genome 540

Introduction to Computational Molecular Biology:

Genome and Protein Sequence Analysis

(Winter Quarter 2016)

HOMEWORK ASSIGNMENTS:

  • Assignment 1, due Sunday Jan 17
  • Assignment 2, due Sunday Jan 24
  • Assignment 3, due Sunday Jan 31
  • Assignment 4, due Sunday Feb 7
  • Assignment 5, due Sunday Feb 14

    SYLLABUS & LECTURE SLIDES:

    Math Notation

    Nature paper on Avida

    Avida web site

    Nature paper on human genome sequence

    Nature paper on mouse genome sequence

    Siepel et al. paper on PhyloHMMs & sequence conservation

    Rabiner tutorial on HMMs

    HMM scaling tutorial (Tobias Mann)

    Supervised learning tutorial

    C/C++ PROGRAMMING GUIDES:

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